IL_4YB1_001

3D structure

PDB id

4YB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP

Experimental method

X-RAY DIFFRACTION

Resolution

2.08 Å

Loop

Sequence

AC*GAU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YB1_001 not in the Motif Atlas

Geometric match to IL_3K0J_002

Geometric discrepancy: 0.2525

The information below is about IL_3K0J_002

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

4YB1|1|R|A|12
4YB1|1|R|C|13
*
4YB1|1|R|G|95
4YB1|1|R|A|96
4YB1|1|R|U|97

Current chains

Chain R

RNA (91-MER)

Nearby chains

Chain P

U1 small nuclear ribonucleoprotein A