IL_4YBB_024

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GAGU*GCUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_024 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2116

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4YBB|1|AA|G|455
4YBB|1|AA|A|456
4YBB|1|AA|G|457
4YBB|1|AA|U|458
*
4YBB|1|AA|G|474
4YBB|1|AA|C|475
4YBB|1|AA|U|476
4YBB|1|AA|C|477

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16