IL_4YBB_026

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4YBB|1|AA|A|532, 4YBB|1|AA|U|534, 4YBB|1|AA|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_026 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2239

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4YBB|1|AA|G|515
4YBB|1|AA|PSU|516
4YBB|1|AA|G|517
4YBB|1|AA|C|518
4YBB|1|AA|C|519
4YBB|1|AA|A|520
4YBB|1|AA|G|521
*
4YBB|1|AA|C|528
4YBB|1|AA|G|529
4YBB|1|AA|G|530
4YBB|1|AA|U|531
4YBB|1|AA|A|532
4YBB|1|AA|A|533
4YBB|1|AA|U|534
4YBB|1|AA|A|535
4YBB|1|AA|C|536

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12