IL_4YBB_035

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4YBB|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0594

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4YBB|1|AA|U|684
4YBB|1|AA|G|685
4YBB|1|AA|U|686
4YBB|1|AA|A|687
4YBB|1|AA|G|688
*
4YBB|1|AA|C|699
4YBB|1|AA|G|700
4YBB|1|AA|U|701
4YBB|1|AA|A|702
4YBB|1|AA|G|703
4YBB|1|AA|A|704
4YBB|1|AA|G|705
4YBB|1|AA|A|706

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA