IL_4YBB_210

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

4YBB|1|CA|A|1801, 4YBB|1|CA|C|1816, 4YBB|1|CA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_210 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0677

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4YBB|1|CA|U|1798
4YBB|1|CA|G|1799
4YBB|1|CA|C|1800
4YBB|1|CA|A|1801
4YBB|1|CA|A|1802
4YBB|1|CA|A|1803
4YBB|1|CA|C|1804
*
4YBB|1|CA|G|1813
4YBB|1|CA|G|1814
4YBB|1|CA|A|1815
4YBB|1|CA|C|1816
4YBB|1|CA|G|1817
4YBB|1|CA|U|1818
4YBB|1|CA|A|1819
4YBB|1|CA|U|1820
4YBB|1|CA|A|1821

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2