IL_4YBB_228

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_228 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.4601

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

4YBB|1|CA|G|2110
4YBB|1|CA|U|2111
4YBB|1|CA|G|2112
4YBB|1|CA|U|2113
4YBB|1|CA|A|2114
4YBB|1|CA|G|2115
4YBB|1|CA|G|2116
4YBB|1|CA|A|2117
4YBB|1|CA|U|2118
4YBB|1|CA|A|2119
4YBB|1|CA|G|2120
4YBB|1|CA|G|2121
*
4YBB|1|CA|C|2177
4YBB|1|CA|C|2178
4YBB|1|CA|C|2179

Current chains

Chain CA

23S rRNA

Nearby chains