IL_4YBB_246

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

4YBB|1|CA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_246 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0552

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4YBB|1|CA|C|2636
4YBB|1|CA|U|2637
4YBB|1|CA|G|2638
4YBB|1|CA|A|2639
4YBB|1|CA|G|2640
*
4YBB|1|CA|C|2774
4YBB|1|CA|G|2775
4YBB|1|CA|A|2776
4YBB|1|CA|G|2777
4YBB|1|CA|A|2778
4YBB|1|CA|U|2779
4YBB|1|CA|G|2780
4YBB|1|CA|A|2781
4YBB|1|CA|G|2782

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CK

50S ribosomal protein L13