IL_4YBB_249

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

4YBB|1|CA|U|2689, 4YBB|1|CA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_249 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0686

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4YBB|1|CA|U|2687
4YBB|1|CA|G|2688
4YBB|1|CA|U|2689
4YBB|1|CA|U|2690
4YBB|1|CA|C|2691
*
4YBB|1|CA|G|2718
4YBB|1|CA|G|2719
4YBB|1|CA|U|2720
4YBB|1|CA|A|2721
4YBB|1|CA|G|2722

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CO

50S ribosomal protein L17

Chain CQ

50S ribosomal protein L19