IL_4YBB_303

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4YBB|1|DA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_303 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1256

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

4YBB|1|DA|G|1059
4YBB|1|DA|U|1060
4YBB|1|DA|U|1061
4YBB|1|DA|G|1062
*
4YBB|1|DA|C|1076
4YBB|1|DA|A|1077
4YBB|1|DA|U|1078
4YBB|1|DA|C|1079

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DI

50S ribosomal protein L10

Chain DJ

50S ribosomal protein L11