IL_4YPB_012

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4YPB|1|QA|U|244, 4YPB|1|QA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_012 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0811

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4YPB|1|QA|C|242
4YPB|1|QA|A|243
4YPB|1|QA|U|244
4YPB|1|QA|C|245
4YPB|1|QA|A|246
4YPB|1|QA|G|247
*
4YPB|1|QA|C|277
4YPB|1|QA|G|278
4YPB|1|QA|A|279
4YPB|1|QA|C|280
4YPB|1|QA|G|281
4YPB|1|QA|A|282
4YPB|1|QA|C|283
4YPB|1|QA|G|284

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QQ

30S ribosomal protein S17