3D structure

PDB id
4YPB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
4YPB|1|QA|U|244, 4YPB|1|QA|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4YPB_012 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.0811
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

4YPB|1|QA|C|242
4YPB|1|QA|A|243
4YPB|1|QA|U|244
4YPB|1|QA|C|245
4YPB|1|QA|A|246
4YPB|1|QA|G|247
*
4YPB|1|QA|C|277
4YPB|1|QA|G|278
4YPB|1|QA|A|279
4YPB|1|QA|C|280
4YPB|1|QA|G|281
4YPB|1|QA|A|282
4YPB|1|QA|C|283
4YPB|1|QA|G|284

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QL
30S ribosomal protein S12
Chain QQ
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1833 s