IL_4YPB_105
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 4YPB|1|RA|U|1033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_105 not in the Motif Atlas
- Homologous match to IL_5J7L_282
- Geometric discrepancy: 0.0927
- The information below is about IL_5J7L_282
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
4YPB|1|RA|G|1031
4YPB|1|RA|A|1032
4YPB|1|RA|U|1033
4YPB|1|RA|G|1034
*
4YPB|1|RA|C|1121
4YPB|1|RA|G|1122
4YPB|1|RA|C|1123
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R9
- 50S ribosomal protein L36
- Chain RH
- 50S ribosomal protein L6
- Chain RN
- 50S ribosomal protein L13
- Chain RQ
- 50S ribosomal protein L16
Coloring options: