IL_4YPB_141
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 4YPB|1|RA|A|1938, 4YPB|1|RA|U|1944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_141 not in the Motif Atlas
- Homologous match to IL_4WF9_077
- Geometric discrepancy: 0.1097
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
4YPB|1|RA|C|1934
4YPB|1|RA|G|1935
4YPB|1|RA|A|1936
4YPB|1|RA|A|1937
4YPB|1|RA|A|1938
4YPB|1|RA|U|1939
4YPB|1|RA|U|1940
4YPB|1|RA|C|1941
4YPB|1|RA|C|1942
4YPB|1|RA|U|1943
4YPB|1|RA|U|1944
4YPB|1|RA|G|1945
*
4YPB|1|RA|C|1961
4YPB|1|RA|C|1962
4YPB|1|RA|U|1963
4YPB|1|RA|G|1964
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain RD
- 50S ribosomal protein L2
Coloring options: