IL_4YPB_288

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4YPB|1|YA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_288 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.251

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

4YPB|1|YA|G|1059
4YPB|1|YA|U|1060
4YPB|1|YA|U|1061
4YPB|1|YA|G|1062
*
4YPB|1|YA|C|1076
4YPB|1|YA|A|1077
4YPB|1|YA|U|1078
4YPB|1|YA|C|1079

Current chains

Chain YA

23S rRNA

Nearby chains