IL_4YZV_107

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4YZV|1|RA|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_107 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.217

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

4YZV|1|RA|G|1059
4YZV|1|RA|U|1060
4YZV|1|RA|U|1061
4YZV|1|RA|G|1062
*
4YZV|1|RA|C|1076
4YZV|1|RA|A|1077
4YZV|1|RA|U|1078
4YZV|1|RA|C|1079

Current chains

Chain RA

23S rRNA

Nearby chains