3D structure

PDB id
4YZV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
4YZV|1|XA|A|532, 4YZV|1|XA|U|534, 4YZV|1|XA|A|535
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4YZV_200 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1454
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4YZV|1|XA|G|515
4YZV|1|XA|U|516
4YZV|1|XA|G|517
4YZV|1|XA|C|518
4YZV|1|XA|C|519
4YZV|1|XA|A|520
4YZV|1|XA|G|521
*
4YZV|1|XA|C|528
4YZV|1|XA|G|529
4YZV|1|XA|G|530
4YZV|1|XA|U|531
4YZV|1|XA|A|532
4YZV|1|XA|A|533
4YZV|1|XA|U|534
4YZV|1|XA|A|535
4YZV|1|XA|C|536

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XC
30S ribosomal protein S3
Chain XD
30S ribosomal protein S4
Chain XL
30S ribosomal protein S12
Chain XX
messenger RNA
Chain XY
Killer protein

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.158 s