IL_4Z8C_123
3D structure
- PDB id
- 4Z8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 4Z8C|1|1a|U|240, 4Z8C|1|1a|C|276
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4Z8C_123 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0683
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4Z8C|1|1a|C|238
4Z8C|1|1a|A|239
4Z8C|1|1a|U|240
4Z8C|1|1a|C|241
4Z8C|1|1a|A|242
4Z8C|1|1a|G|243
*
4Z8C|1|1a|C|273
4Z8C|1|1a|G|274
4Z8C|1|1a|A|275
4Z8C|1|1a|C|276
4Z8C|1|1a|G|277
4Z8C|1|1a|A|278
4Z8C|1|1a|C|279
4Z8C|1|1a|G|280
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1q
- 30S ribosomal protein S17
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