IL_4Z8C_311

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4Z8C|1|2a|A|516, 4Z8C|1|2a|U|518, 4Z8C|1|2a|A|519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_311 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.138

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4Z8C|1|2a|G|499
4Z8C|1|2a|U|500
4Z8C|1|2a|G|501
4Z8C|1|2a|C|502
4Z8C|1|2a|C|503
4Z8C|1|2a|A|504
4Z8C|1|2a|G|505
*
4Z8C|1|2a|C|512
4Z8C|1|2a|G|513
4Z8C|1|2a|G|514
4Z8C|1|2a|U|515
4Z8C|1|2a|A|516
4Z8C|1|2a|A|517
4Z8C|1|2a|U|518
4Z8C|1|2a|A|519
4Z8C|1|2a|C|520

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12