IL_4ZER_076
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 4ZER|1|1A|A|1960, 4ZER|1|1A|U|1966, 4ZER|1|1A|U|1985
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4ZER_076 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1151
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
4ZER|1|1A|C|1956
4ZER|1|1A|G|1957
4ZER|1|1A|A|1958
4ZER|1|1A|A|1959
4ZER|1|1A|A|1960
4ZER|1|1A|5MU|1961
4ZER|1|1A|U|1962
4ZER|1|1A|C|1963
4ZER|1|1A|5MC|1964
4ZER|1|1A|U|1965
4ZER|1|1A|U|1966
4ZER|1|1A|G|1967
*
4ZER|1|1A|C|1983
4ZER|1|1A|5MC|1984
4ZER|1|1A|U|1985
4ZER|1|1A|G|1986
Current chains
- Chain 1A
- 23s ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
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