IL_4ZER_250

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

4ZER|1|2A|A|1938, 4ZER|1|2A|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_250 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1183

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

4ZER|1|2A|C|1934
4ZER|1|2A|G|1935
4ZER|1|2A|A|1936
4ZER|1|2A|A|1937
4ZER|1|2A|A|1938
4ZER|1|2A|5MU|1939
4ZER|1|2A|U|1940
4ZER|1|2A|C|1941
4ZER|1|2A|5MC|1942
4ZER|1|2A|U|1943
4ZER|1|2A|U|1944
4ZER|1|2A|G|1945
*
4ZER|1|2A|C|1961
4ZER|1|2A|5MC|1962
4ZER|1|2A|U|1963
4ZER|1|2A|G|1964

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA