IL_4ZER_327

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_327 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.063

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4ZER|1|2a|G|887
4ZER|1|2a|G|888
4ZER|1|2a|A|889
4ZER|1|2a|G|890
4ZER|1|2a|U|891
4ZER|1|2a|A|892
4ZER|1|2a|C|893
4ZER|1|2a|G|894
*
4ZER|1|2a|U|905
4ZER|1|2a|G|906
4ZER|1|2a|A|907
4ZER|1|2a|A|908
4ZER|1|2a|A|909
4ZER|1|2a|C|910

Current chains

Chain 2a

16s ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17