IL_5A9Z_001

3D structure

PDB id

5A9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGGAUG*CUGAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A9Z_001 not in the Motif Atlas

Geometric match to IL_8B0X_056

Geometric discrepancy: 0.3955

The information below is about IL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5A9Z|1|AA|U|25||||P_1
5A9Z|1|AA|G|26||||P_1
5A9Z|1|AA|G|27||||P_1
5A9Z|1|AA|A|28||||P_1
5A9Z|1|AA|U|29||||P_1
5A9Z|1|AA|G|30||||P_1
*
5A9Z|1|AA|C|510||||P_1
5A9Z|1|AA|U|511||||P_1
5A9Z|1|AA|G|512||||P_1
5A9Z|1|AA|A|513||||P_1
5A9Z|1|AA|A|514||||P_1
5A9Z|1|AA|A|515||||P_1

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AR

50S ribosomal protein L20

Chain AT

50S ribosomal protein L22

Chain Ab

50S ribosomal protein L32