IL_5AA0_004
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GGGAG*CGUGGAUC
- Length
- 13 nucleotides
- Bulged bases
- 5AA0|1|AA|G|101||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_004 not in the Motif Atlas
- Homologous match to IL_7A0S_004
- Geometric discrepancy: 0.4598
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5AA0|1|AA|G|81||||P_1
5AA0|1|AA|G|82||||P_1
5AA0|1|AA|G|83||||P_1
5AA0|1|AA|A|84||||P_1
5AA0|1|AA|G|85||||P_1
*
5AA0|1|AA|C|97||||P_1
5AA0|1|AA|G|98||||P_1
5AA0|1|AA|U|99||||P_1
5AA0|1|AA|G|101||||P_1
5AA0|1|AA|G|102||||P_1
5AA0|1|AA|A|103||||P_1
5AA0|1|AA|U|104||||P_1
5AA0|1|AA|C|105||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AV
- 50S ribosomal protein L24
- Chain AY
- 50S ribosomal protein L29
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