IL_5AA0_042

3D structure

PDB id

5AA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AA0_042 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3377

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5AA0|1|AA|G|1319||||P_1
5AA0|1|AA|C|1320||||P_1
5AA0|1|AA|A|1321||||P_1
5AA0|1|AA|A|1322||||P_1
5AA0|1|AA|U|1323||||P_1
5AA0|1|AA|G|1324||||P_1
*
5AA0|1|AA|C|1330||||P_1
5AA0|1|AA|A|1331||||P_1
5AA0|1|AA|G|1332||||P_1
5AA0|1|AA|C|1333||||P_1

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AT

50S ribosomal protein L22

Chain AU

50S ribosomal protein L23