IL_5AA0_125
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5AA0|1|BA|A|532||||P_1, 5AA0|1|BA|U|534||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_125 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.3606
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5AA0|1|BA|G|515||||P_1
5AA0|1|BA|U|516||||P_1
5AA0|1|BA|G|517||||P_1
5AA0|1|BA|C|518||||P_1
5AA0|1|BA|C|519||||P_1
5AA0|1|BA|A|520||||P_1
5AA0|1|BA|G|521||||P_1
*
5AA0|1|BA|C|528||||P_1
5AA0|1|BA|G|529||||P_1
5AA0|1|BA|G|530||||P_1
5AA0|1|BA|U|531||||P_1
5AA0|1|BA|A|532||||P_1
5AA0|1|BA|A|533||||P_1
5AA0|1|BA|U|534||||P_1
5AA0|1|BA|A|535||||P_1
5AA0|1|BA|C|536||||P_1
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BD
- Transfer RNA; tRNA
- Chain BG
- 30S ribosomal protein S3
- Chain BH
- 30S ribosomal protein S4
- Chain BP
- 30S ribosomal protein S12
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