3D structure

PDB id
5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
Experimental method
ELECTRON MICROSCOPY
Resolution
5 Å

Loop

Sequence
CCGAAG*CGAGG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5AA0_160 not in the Motif Atlas
Geometric match to IL_5J7L_063
Geometric discrepancy: 0.3852
The information below is about IL_5J7L_063
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_80231.1
Basepair signature
cWW-L-R-L-R-L-R-tHS-cWW
Number of instances in this motif group
2

Unit IDs

5AA0|1|BA|C|1430||||P_1
5AA0|1|BA|C|1431||||P_1
5AA0|1|BA|G|1432||||P_1
5AA0|1|BA|A|1433||||P_1
5AA0|1|BA|A|1434||||P_1
5AA0|1|BA|G|1435||||P_1
*
5AA0|1|BA|C|1466||||P_1
5AA0|1|BA|G|1467||||P_1
5AA0|1|BA|A|1468||||P_1
5AA0|1|BA|G|1469||||P_1
5AA0|1|BA|G|1470||||P_1

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain AL
50S ribosomal protein L14
Chain AQ
50S ribosomal protein L19

Coloring options:


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