IL_5AA0_160
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CCGAAG*CGAGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_160 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.3852
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5AA0|1|BA|C|1430||||P_1
5AA0|1|BA|C|1431||||P_1
5AA0|1|BA|G|1432||||P_1
5AA0|1|BA|A|1433||||P_1
5AA0|1|BA|A|1434||||P_1
5AA0|1|BA|G|1435||||P_1
*
5AA0|1|BA|C|1466||||P_1
5AA0|1|BA|G|1467||||P_1
5AA0|1|BA|A|1468||||P_1
5AA0|1|BA|G|1469||||P_1
5AA0|1|BA|G|1470||||P_1
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL
- 50S ribosomal protein L14
- Chain AQ
- 50S ribosomal protein L19
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