IL_5ADY_083

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5ADY|1|B|A|1801, 5ADY|1|B|C|1816, 5ADY|1|B|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_083 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.2052

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5ADY|1|B|U|1798
5ADY|1|B|G|1799
5ADY|1|B|C|1800
5ADY|1|B|A|1801
5ADY|1|B|A|1802
5ADY|1|B|A|1803
5ADY|1|B|C|1804
*
5ADY|1|B|G|1813
5ADY|1|B|G|1814
5ADY|1|B|A|1815
5ADY|1|B|C|1816
5ADY|1|B|G|1817
5ADY|1|B|U|1818
5ADY|1|B|A|1819
5ADY|1|B|U|1820
5ADY|1|B|A|1821

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2