IL_5ADY_117

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

5ADY|1|B|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_117 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.2011

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5ADY|1|B|C|2636
5ADY|1|B|U|2637
5ADY|1|B|G|2638
5ADY|1|B|A|2639
5ADY|1|B|G|2640
*
5ADY|1|B|C|2774
5ADY|1|B|G|2775
5ADY|1|B|A|2776
5ADY|1|B|G|2777
5ADY|1|B|A|2778
5ADY|1|B|U|2779
5ADY|1|B|G|2780
5ADY|1|B|A|2781
5ADY|1|B|G|2782

Current chains

Chain B

23S RRNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain J

50S RIBOSOMAL PROTEIN L13