IL_5ADY_136

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

5ADY|1|B|G|729

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_136 not in the Motif Atlas

Geometric match to IL_3FTF_001

Geometric discrepancy: 0.2601

The information below is about IL_3FTF_001

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5ADY|1|B|U|702
5ADY|1|B|U|703
5ADY|1|B|G|704
5ADY|1|B|A|705
5ADY|1|B|A|706
5ADY|1|B|G|707
*
5ADY|1|B|U|724
5ADY|1|B|G|725
5ADY|1|B|G|726
5ADY|1|B|A|727
5ADY|1|B|G|728
5ADY|1|B|G|729
5ADY|1|B|A|730

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2