IL_5AJ0_006

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCAGUAA*UGAACAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86124.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

32

Unit IDs

5AJ0|1|A2|C|81
5AJ0|1|A2|U|82
5AJ0|1|A2|C|83
5AJ0|1|A2|A|84
5AJ0|1|A2|G|85
5AJ0|1|A2|U|86
5AJ0|1|A2|A|87
5AJ0|1|A2|A|88
*
5AJ0|1|A2|U|96
5AJ0|1|A2|G|97
5AJ0|1|A2|A|98
5AJ0|1|A2|A|99
5AJ0|1|A2|C|100
5AJ0|1|A2|A|101
5AJ0|1|A2|G|102

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L13

Chain AN

60S ribosomal protein L15

Chain AQ

60S ribosomal protein L18

Chain Aa

60S ribosomal protein L27a