IL_5AJ0_008

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_008 not in the Motif Atlas

Geometric match to IL_3D0U_006

Geometric discrepancy: 0.214

The information below is about IL_3D0U_006

Detailed Annotation

Isolated non-canonical cWW

Broad Annotation

No text annotation

Motif group

IL_64928.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

263

Unit IDs

5AJ0|1|A2|C|125
5AJ0|1|A2|C|126
5AJ0|1|A2|G|127
*
5AJ0|1|A2|C|140
5AJ0|1|A2|G|141
5AJ0|1|A2|G|142

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AG

60S ribosomal protein L7a

Chain AN

60S ribosomal protein L15

Chain AX

60S ribosomal protein L23a

Chain Ah

60S ribosomal protein L35