IL_5AJ0_023

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUCAACC*GGGCGCAU

Length

16 nucleotides

Bulged bases

5AJ0|1|A2|G|679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10928.1

Basepair signature

cWW-L-R-R-L-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5AJ0|1|A2|A|460
5AJ0|1|A2|U|461
5AJ0|1|A2|U|462
5AJ0|1|A2|C|463
5AJ0|1|A2|A|464
5AJ0|1|A2|A|465
5AJ0|1|A2|C|466
5AJ0|1|A2|C|467
*
5AJ0|1|A2|G|675
5AJ0|1|A2|G|676
5AJ0|1|A2|G|677
5AJ0|1|A2|C|678
5AJ0|1|A2|G|679
5AJ0|1|A2|C|680
5AJ0|1|A2|A|681
5AJ0|1|A2|U|682

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L6

Chain At

60S ribosomal protein L28