IL_5AJ0_040

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUGGGAAGG*CAGCAGCACUCGC

Length

23 nucleotides

Bulged bases

5AJ0|1|A2|U|719, 5AJ0|1|A2|G|720, 5AJ0|1|A2|A|922

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96877.1

Basepair signature

cWW-R-R-R-R-R-tWH-L-R-L-L-tHW-R-cWH-cWW

Number of instances in this motif group

1

Unit IDs

5AJ0|1|A2|G|717
5AJ0|1|A2|C|718
5AJ0|1|A2|U|719
5AJ0|1|A2|G|720
5AJ0|1|A2|G|721
5AJ0|1|A2|G|722
5AJ0|1|A2|A|723
5AJ0|1|A2|A|724
5AJ0|1|A2|G|725
5AJ0|1|A2|G|726
*
5AJ0|1|A2|C|915
5AJ0|1|A2|A|916
5AJ0|1|A2|G|917
5AJ0|1|A2|C|918
5AJ0|1|A2|A|919
5AJ0|1|A2|G|920
5AJ0|1|A2|C|921
5AJ0|1|A2|A|922
5AJ0|1|A2|C|923
5AJ0|1|A2|U|924
5AJ0|1|A2|C|925
5AJ0|1|A2|G|926
5AJ0|1|A2|C|927

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AF

60S ribosomal protein L7

Chain AM

60S ribosomal protein L14

Chain AS

60S ribosomal protein L18a