IL_5AJ0_047

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUC*GGCCCGG

Length

11 nucleotides

Bulged bases

5AJ0|1|A2|G|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39984.1

Basepair signature

cWW-L-R-R-R-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5AJ0|1|A2|C|1064
5AJ0|1|A2|C|1065
5AJ0|1|A2|U|1066
5AJ0|1|A2|C|1067
*
5AJ0|1|A2|G|1195
5AJ0|1|A2|G|1196
5AJ0|1|A2|C|1197
5AJ0|1|A2|C|1198
5AJ0|1|A2|C|1199
5AJ0|1|A2|G|1200
5AJ0|1|A2|G|1201

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L7