Motif IL_39984.1 Version IL_39984.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-7 | 4-5 | 4-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5AJ0_047 | 5AJ0 | 0.6655 | 1 | A2 | LSU rRNA | C | 1064 | C | 1065 | U | 1066 | C | 1067 | * | G | 1195 | C | 1197 | C | 1198 | C | 1199 | G | 1200 | G | 1201 | cWW | ncWB | ncWW | ncWB | ||
| 2 | IL_3J7P_098 | 3J7P | 0.0000 | 0 | 5 | LSU rRNA | A | 2894 | A | 2895 | G | 2896 | G | 2897 | * | C | 3602 | G | 3603 | A | 3604 | C | 3605 | U | 3606 | U | 3607 | ncWH | cWW | ||||
| 3 | IL_3JCT_125 | 3JCT | 0.5738 | 1 | 6 | ITS2-1 miscRNA | G | 44 | U | 45 | U | 46 | A | 48 | * | U | 30 | G | 31 | A | 32 | U | 33 | A | 34 | C | 35 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUC*GGCCCGG | 1 |
| AAGG*CGACUU | 1 |
| GUUAA*UGAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CU*GCCCG | 1 |
| AG*GACU | 1 |
| UUA*GAUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-R-R-R-L-cWW
- Heat map statistics
- Min 0.57 | Avg 0.43 | Max 0.69
Coloring options: