IL_5AJ0_086
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 5AJ0|1|A2|C|1916, 5AJ0|1|A2|A|2022
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_08380.1
- Basepair signature
- cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5AJ0|1|A2|G|1914
5AJ0|1|A2|A|1915
5AJ0|1|A2|C|1916
5AJ0|1|A2|C|1917
5AJ0|1|A2|C|1918
5AJ0|1|A2|C|1919
5AJ0|1|A2|A|1920
5AJ0|1|A2|G|1921
5AJ0|1|A2|A|1922
5AJ0|1|A2|A|1923
5AJ0|1|A2|A|1924
5AJ0|1|A2|A|1925
*
5AJ0|1|A2|U|2019
5AJ0|1|A2|G|2020
5AJ0|1|A2|A|2021
5AJ0|1|A2|A|2022
5AJ0|1|A2|A|2023
5AJ0|1|A2|A|2024
5AJ0|1|A2|U|2025
5AJ0|1|A2|G|2026
5AJ0|1|A2|G|2027
5AJ0|1|A2|A|2028
5AJ0|1|A2|U|2029
5AJ0|1|A2|G|2030
5AJ0|1|A2|G|2031
5AJ0|1|A2|C|2032
5AJ0|1|A2|G|2033
5AJ0|1|A2|C|2034
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain AB
- 60S ribosomal protein L3
- Chain AI
- 60S ribosomal protein L10
- Chain AO
- 60S ribosomal protein L13a
- Chain Af
- 60S ribosomal protein L35a
- Chain Am
- Ubiquitin-60S ribosomal protein L40
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