IL_5AJ0_087

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5AJ0|1|A2|U|1928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57598.1

Basepair signature

cWW-cWW

Number of instances in this motif group

400

Unit IDs

5AJ0|1|A2|G|1927
5AJ0|1|A2|U|1928
5AJ0|1|A2|G|1929
*
5AJ0|1|A2|C|2016
5AJ0|1|A2|C|2017

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AH

60S ribosomal protein L9

Chain AI

60S ribosomal protein L10

Chain AS

60S ribosomal protein L18a

Chain Am

Ubiquitin-60S ribosomal protein L40