IL_5AJ0_095

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5AJ0|1|A2|U|2284

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02471.1

Basepair signature

cWW-tSS-L-tSH-tSS-tHS-tHS-cWW

Number of instances in this motif group

41

Unit IDs

5AJ0|1|A2|C|2281
5AJ0|1|A2|C|2282
5AJ0|1|A2|U|2283
5AJ0|1|A2|U|2284
5AJ0|1|A2|G|2285
5AJ0|1|A2|A|2286
5AJ0|1|A2|A|2287
5AJ0|1|A2|G|2288
*
5AJ0|1|A2|U|2308
5AJ0|1|A2|G|2309
5AJ0|1|A2|G|2310
5AJ0|1|A2|A|2311
5AJ0|1|A2|G|2312

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S ribosomal protein L4

Chain AP

60S ribosomal protein L17

Chain AY

60S ribosomal protein L26

Chain Ae

60S ribosomal protein L32