IL_5AJ0_099

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAACA*UGAA

Length

10 nucleotides

Bulged bases

5AJ0|1|A2|A|2407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71655.1

Basepair signature

cWW-tSW-tWH-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5AJ0|1|A2|U|2394
5AJ0|1|A2|G|2395
5AJ0|1|A2|A|2396
5AJ0|1|A2|A|2397
5AJ0|1|A2|C|2398
5AJ0|1|A2|A|2399
*
5AJ0|1|A2|U|2405
5AJ0|1|A2|G|2406
5AJ0|1|A2|A|2407
5AJ0|1|A2|A|2408

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AP

60S ribosomal protein L17

Chain AR

60S ribosomal protein L19

Chain Al

60S ribosomal protein L39

Chain By

Nascent protein chain