IL_5AJ0_103

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UCG,CGA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_103 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1759

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5AJ0|1|A2|U|2498
5AJ0|1|A2|C|2499
5AJ0|1|A2|G|2500
*
5AJ0|1|A2|C|2513
5AJ0|1|A2|G|2514
5AJ0|1|A2|A|2515

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AX

60S ribosomal protein L23a

Chain Ag

60S ribosomal protein L34

Chain Ak

60S ribosomal protein L38