3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
AACAAUG*CUAU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_69914.1
Basepair signature
cWW-L-L-L-tHS-L-R-cWW
Number of instances in this motif group
8

Unit IDs

5AJ0|1|A2|A|2811
5AJ0|1|A2|A|2812
5AJ0|1|A2|C|2813
5AJ0|1|A2|A|2814
5AJ0|1|A2|A|2815
5AJ0|1|A2|U|2816
5AJ0|1|A2|G|2817
*
5AJ0|1|A2|C|3821
5AJ0|1|A2|U|3822
5AJ0|1|A2|A|3823
5AJ0|1|A2|U|3824

Current chains

Chain A2
28S ribosomal RNA

Nearby chains

Chain AB
60S ribosomal protein L3
Chain AP
60S ribosomal protein L17
Chain Ad
60S ribosomal protein L31

Coloring options:

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