IL_5AJ0_117

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

5AJ0|1|A2|U|2859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95863.1

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5AJ0|1|A2|C|2846
5AJ0|1|A2|G|2847
5AJ0|1|A2|U|2848
5AJ0|1|A2|A|2849
5AJ0|1|A2|A|2850
5AJ0|1|A2|C|2851
*
5AJ0|1|A2|G|2856
5AJ0|1|A2|G|2857
5AJ0|1|A2|A|2858
5AJ0|1|A2|U|2859
5AJ0|1|A2|A|2860
5AJ0|1|A2|A|2861
5AJ0|1|A2|G|2862

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain An

60S ribosomal protein L41

Chain Ap

60S ribosomal protein L37a

Chain B1

Small subunit ribosomal RNA; SSU rRNA