IL_5AJ0_138

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92628.1

Basepair signature

cWW-tSH-tWH-tWH-R-R-R-R-R-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5AJ0|1|A2|G|3941
5AJ0|1|A2|G|3942
5AJ0|1|A2|A|3943
5AJ0|1|A2|G|3944
*
5AJ0|1|A2|C|4008
5AJ0|1|A2|G|4009
5AJ0|1|A2|C|4010
5AJ0|1|A2|C|4011
5AJ0|1|A2|G|4012
5AJ0|1|A2|G|4013
5AJ0|1|A2|U|4014
5AJ0|1|A2|G|4015
5AJ0|1|A2|A|4016
5AJ0|1|A2|A|4017
5AJ0|1|A2|A|4018
5AJ0|1|A2|U|4019
5AJ0|1|A2|A|4020
5AJ0|1|A2|C|4021

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Au

60S ribosomal protein L10a

Chain Bw

Transfer RNA; tRNA