IL_5AJ0_152

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

5AJ0|1|A2|G|4484, 5AJ0|1|A2|A|4485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_152 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1226

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5AJ0|1|A2|C|4418
5AJ0|1|A2|U|4419
5AJ0|1|A2|C|4420
*
5AJ0|1|A2|G|4482
5AJ0|1|A2|U|4483
5AJ0|1|A2|G|4484
5AJ0|1|A2|A|4485
5AJ0|1|A2|G|4486

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AV

60S ribosomal protein L23