IL_5AJ0_155

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

5AJ0|1|A2|A|4450

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58262.1

Basepair signature

cWW-tHS-cHW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5AJ0|1|A2|U|4430
5AJ0|1|A2|U|4431
5AJ0|1|A2|G|4432
*
5AJ0|1|A2|C|4447
5AJ0|1|A2|C|4448
5AJ0|1|A2|A|4449
5AJ0|1|A2|A|4450
5AJ0|1|A2|G|4451

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L9

Chain AO

60S ribosomal protein L13a

Chain Am

Ubiquitin-60S ribosomal protein L40