3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CCAU*AGGCG
Length
9 nucleotides
Bulged bases
5AJ0|1|A2|C|4682
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_75779.1
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
55

Unit IDs

5AJ0|1|A2|C|4544
5AJ0|1|A2|C|4545
5AJ0|1|A2|A|4546
5AJ0|1|A2|U|4547
*
5AJ0|1|A2|A|4679
5AJ0|1|A2|G|4680
5AJ0|1|A2|G|4681
5AJ0|1|A2|C|4682
5AJ0|1|A2|G|4683

Current chains

Chain A2
28S ribosomal RNA

Nearby chains

Chain AB
60S ribosomal protein L3
Chain AO
60S ribosomal protein L13a

Coloring options:

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