IL_5AJ0_161

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86124.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

32

Unit IDs

5AJ0|1|A2|C|4558
5AJ0|1|A2|U|4559
5AJ0|1|A2|C|4560
5AJ0|1|A2|A|4561
5AJ0|1|A2|G|4562
5AJ0|1|A2|U|4563
5AJ0|1|A2|A|4564
5AJ0|1|A2|C|4565
*
5AJ0|1|A2|G|4570
5AJ0|1|A2|G|4571
5AJ0|1|A2|A|4572
5AJ0|1|A2|A|4573
5AJ0|1|A2|C|4574
5AJ0|1|A2|C|4575
5AJ0|1|A2|G|4576

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AH

60S ribosomal protein L9

Chain AV

60S ribosomal protein L23

Chain Am

Ubiquitin-60S ribosomal protein L40