IL_5AJ0_172

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAAACGG*CCUCGCCC

Length

17 nucleotides

Bulged bases

5AJ0|1|A2|C|4884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12821.1

Basepair signature

cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW

Number of instances in this motif group

1

Unit IDs

5AJ0|1|A2|G|4847
5AJ0|1|A2|G|4848
5AJ0|1|A2|G|4849
5AJ0|1|A2|A|4850
5AJ0|1|A2|A|4851
5AJ0|1|A2|A|4852
5AJ0|1|A2|C|4853
5AJ0|1|A2|G|4854
5AJ0|1|A2|G|4855
*
5AJ0|1|A2|C|4881
5AJ0|1|A2|C|4882
5AJ0|1|A2|U|4883
5AJ0|1|A2|C|4884
5AJ0|1|A2|G|4885
5AJ0|1|A2|C|4886
5AJ0|1|A2|C|4887
5AJ0|1|A2|C|4888

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L6

Chain AM

60S ribosomal protein L14

Chain AO

60S ribosomal protein L13a