IL_5AJ0_179

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87260.1

Basepair signature

cWW-cWW-tSH-L-L-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5AJ0|1|A2|U|4961
5AJ0|1|A2|C|4962
5AJ0|1|A2|G|4963
5AJ0|1|A2|U|4964
5AJ0|1|A2|A|4965
5AJ0|1|A2|C|4966
5AJ0|1|A2|G|4967
*
5AJ0|1|A2|U|4997
5AJ0|1|A2|U|4998
5AJ0|1|A2|G|4999
5AJ0|1|A2|A|5000
5AJ0|1|A2|A|5001
5AJ0|1|A2|A|5002

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AW

60S ribosomal protein L24

Chain Ad

60S ribosomal protein L31