Motif IL_87260.1 Version IL_87260.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 6-9 | 7-8 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3JCS_123 | 3JCS | 0.0000 | 1 | 5 | 26S epsilon ribosomal RNA | G | 38 | C | 39 | A | 40 | U | 41 | G | 42 | A | 43 | G | 44 | * | U | 103 | G | 104 | G | 106 | G | 107 | C | 108 | cWW | ncWW | ntWS | ncWW | ||
| 2 | IL_5AJ0_179 | 5AJ0 | 0.3316 | 1 | A2 | LSU rRNA | U | 4961 | C | 4962 | G | 4963 | U | 4964 | A | 4965 | C | 4966 | G | 4967 | * | U | 4997 | U | 4998 | A | 5000 | A | 5001 | A | 5002 | cWW | cWW | tSH | tHH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAUGAG*UGAGGC | 1 |
| UCGUACG*UUGAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAUGA*GAGG | 1 |
| CGUAC*UGAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-tSH-L-L-tHH-cWW
- Heat map statistics
- Min 0.33 | Avg 0.17 | Max 0.33
Coloring options: