IL_5AJ0_187

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUCUC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_187 not in the Motif Atlas

Geometric match to IL_7RQB_114

Geometric discrepancy: 0.1571

The information below is about IL_7RQB_114

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.6

Basepair signature

cWW-cWS-L-tSW-L-cWW

Number of instances in this motif group

8

Unit IDs

5AJ0|1|A4|A|32
5AJ0|1|A4|U|33
5AJ0|1|A4|C|34
5AJ0|1|A4|U|35
5AJ0|1|A4|C|36
*
5AJ0|1|A4|G|41
5AJ0|1|A4|A|42
5AJ0|1|A4|U|43
5AJ0|1|A4|C|44
5AJ0|1|A4|U|45

Current chains

Chain A4

5S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AD

60S ribosomal protein L5

Chain AJ

60S ribosomal protein L11